Carbon-based electrodes are used in flow batteries to provide active centers for vanadium redox reactions. However, strong controversy exists about the exact origin of these centers. This study systematically explores the influence of structural and functional groups on the vanadium reactions at carbon surfaces. Pyridine, phenol and butyl containing groups are attached to graphite felt electrodes. To establish a unique comparison between the model and real-world behavior, both non-activated and commercially used thermally activated felts serve as a substrate. Results reveal enhanced half-cell performance in non-activated felt with introduced hydrophilic functionalities. However, this cannot be transferred to the thermally activated felt. Beyond a decrease in electrochemical activity, a reduced long-term stability can be observed. This work indicates that thermal treatment generates active sites that surpass the effect of functional groups and are even impeded by their introduction.